I have had this problem 3 times. And it only seems to happen when the window is wet and gets opened. The window will go up 80%, then go back down. Sometimes when holding the up button, it comes off track. Honda has replaced the motor twice.
This happened on both my driver and passenger door windows within 3 weeks of buying my certified used Honda Civic form a Honda dealer. Thankfully I still had the warranty, because the driver side needed to be fixed twice and the passenger window once. Both times, the driver side window, the motor was broken and the passenger window had come off the track.
Front window will not roll up automatically becasue it is off. it wil go half way up and stop. Had it fixed once while under waranty, then broke a short time later. I have not botherd to fix again. If I do I will be looking at after market parts.