2006 jeep commander both front windows want roll up

Hello, have you checked to ensure the window lock button is not depressed? I cannot think of a software that would cause this to both windows. To me, it sounds like you may have a master power window switch problem, which allows operation one way but not the other. Seek guidance at a local shop near you. https://repairpal.com/auto-repair-near-me Click the link or call us at 877-913-1554. We'll gladly find you a certified RepairPal shop in your area.