Certain manual transmissions can cause a clicking noise when turning right due to a reverse gear contacting other gears in the transmission. The transmission needs to be disassembled and new updated gears installed to stop the noise.
Problems for specific Honda Civic years:
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Most reported 2001 Honda Civic problems
Excessive second clutch wear (automatic transmission) can cause the car not to move and set a Check Engine light (MIL). Replacing the transmission is necessary when this happens.
On some engines a sticking variable valve timing valve can cause the Check Engine light (MIL) to illuminate. Replacing the valve and a software update will address this issue.
CVT models (HX and GX) have a shudder, judder, and noise due to a worn start clutch in the transmission. Replacing the start clutch is needed to address this issue.