I was quoted $2400-$3500 depending on the amount of damage they found when they got into it. The diagnostice code is P1744 (TCC System Performance)
What is a fair price to pay for a transmission rebuild? on 2000 Lincoln Continental
there estimate sounds right. you could also look into a reman unit from Ford. it will be close to the 3500 and have a 3 yr 50k warranty.