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I had a similar issue with my Saturn and it turned out to be the Pass Lock system. I have found if I lock my steering wheel before getting out that I have issues with starting my car and have to re-set the pass lock system. There is a way to disconnect the Pass Lock system completely, but the light will constantly stay on after that. Try and see if not locking your steering wheel makes a difference.
IS it true that only the dealer can do a Trans flush on a Saturn Ion? I have gotten conflicting info so I want to be sure. Thanks