Standing water in the passenger side front and rear floor boards when it rains. on 2012 Jeep Compass

The windows are up, no sunroof, so what is the issue? I have already pulled out a gallon of clean water from these areas.

Asked by for the 2012 Jeep Compass
Any warranty left?
Yes, but am too far away from a dealer. I live in rural Alaska. Can they do anything for me by letting a repair shop know what to look for and then cover the repair?
Don't really know for sure but I think so! Call the corporate office, number is in your paperwork or owners manual.