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Q:

My moonroof doesn't close sometimes, but opens fine all the time. on 2012 Lincoln MKX

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Moonroof opens without any problems but sometimes it will not close. It acts like it is stuck. You literally have to push it closed.
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Try spraying silicone lubricant into the tracks... Roof panel may be shifting then binding in 'forward' motion... IF that doesn't help let me know.