Noise comes and goes. Loudest in lower gears and in downshifting. Once it starts, it can be heard when shifted to neutral, but stops once clutch is depressed. Often clicking noise can be stopped by depressing clutch and re-engaging gear. Clicking is not loud. Does not sound like a mechanical grinding or rubbing.
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1998 Honda Civic Question: Intermittent clicking noise when shifting in lower gears (1-3).
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