The front brake rotors can warp and cause a vibration when braking. The rotors will need to be machined or in cases where they are worn to thin, replaced to correct this issue.
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Newest reported 2009 Honda Pilot problems
A chirp noise from the timing belt area can be caused by a tilted idler pulley. Installing a corrective shim from Honda will commonly correct this issue.
Noise and judder can develop from the rear axle due to differential fluid breakdown. Replacing the fluid will commonly correct this issue.
On certain models a leaking side marker light wire harness can cause a water leak inside the vehicle. Resealing the wire harness where it goes through the body into the cabin area should stop the leak.
On certain models the PCM misinterprets data from the coolant sensor and sets a false Check Engine light (MIL). A software update from Honda will repair this issue.