On certain models the windshield wipers will not park in the proper place or won't shut off. The wiper motor must be replaced to repair this issue.
Problems for specific Honda Civic years:
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Repairpal verified 2001 Honda Civic problems
On some engines a sticking variable valve timing valve can cause the Check Engine light (MIL) to illuminate. Replacing the valve and a software update will address this issue.
CVT models (HX and GX) have a shudder, judder, and noise due to a worn start clutch in the transmission. Replacing the start clutch is needed to address this issue.