The throttle body can accumulate carbon deposits causing the throttle to stick or pop when first accelerating after the vehicle sits for a while. Performing a throttle body service will generally correct this problem.
Problems for specific Honda Accord years:
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Most reported 2001 Honda Accord problems
A rough idle and harsh transmission shift can be caused by a broken front engine mount. Replacing the broken mount will address these issues.
Delphi style alternators on some of the engines have a history of alternator bearing failure. Bearing failure will cause a whining noise coming from the engine compartment.